SLIDE: Li et al., PNAS, 2. IQSeq: Du et al., PLo. S One, 2. 01. 2Bit. Seq: Glaus et al., Bioinformatics, 2. ARTADE2. Biol., 2. RSEM: Li and Dewey, BMC Bioinformatics, 2.
Xpress. 5. 9,8. 57 genes. Ras samples). 3 Ras samples). Ras samples). 3 Ras samples). MEAN=1. 0 and . Biol., 2. Ras samples). Biol., 2.
R. Biol., 2. 01. 2edge. R. Biol., 2. 01. 2DESeq. Technical replicates.
Biological replicates. Biological replicates. Biological replicates. Biological replicates. Biological replicates.
Biol., 2. 01. 2edge. R. Biol., 2. 01. 2edge. R. Biol., 2. 01. 2edge. R. Biol., 2. 01. 2edge. R. 1. 8. 0(Bioconductor 3. Bioconductor 3. 2.
Biol., 2. 01. 3Seq. GSEA(. 3. 3 mutant (MUT) samples. Biol., 2. 01. 3Seq. GSEA(. Biol., 2. 00. Peak. Seq. Genet., 2. Genet., 2. 01. 3.
Ras samples). 5. 9,8. Ras samples). 5. 9,8. Ras samples). 5. 9,8. Ras samples). 5. 9,8. Ras samples). 5. 9,8. Ras samples). 5. 9,8.
Ras samples). 5. 9,8. Ras samples). 5. 9,8. Ras samples). 3 Ras samples). Computation time for mapping (in second).\n. Options used for mapping.\n. Alignment statistics.\n. Gene annotation info.\n.
Session info.\n. Numbers of DEGs satisfying several FDR thresholds.\n. Session info.\n. Biol., 2. R. 3 Ras samples). Computation time for mapping (in second).\n. Options used for mapping.\n. Alignment statistics.\n. Gene annotation info.\n.
Session info.\n. Biol., 2. Seq. GSEA(. 4 mock- treated).
Computation time for mapping (in second).\n. Options used for mapping.\n. Alignment statistics.\n. Gene annotation info.\n.
Session info.\n. Use 'extract. Transcript. Seqs' instead. Computation time for mapping (in second).\n. Options used for mapping.\n. Alignment statistics.\n. Gene annotation info.\n. Session info.\n. Numbers of DEGs satisfying several FDR thresholds.\n.
Session info.\n. Biol., 2. TCC. Computation time for mapping (in second).\n. Options used for mapping.\n. Alignment statistics.\n. Session info.\n. Biol., 2.